PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_F64E07A92.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 168aa    MW: 18766.2 Da    PI: 10.0299
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_F64E07A92.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.23.5e-332684159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                   WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                           ldDgy+WrKYGqK vk+s fprsYYrCt a+C vkk vers++dp++v++tYeg+H h+
  Traes_1AL_F64E07A92.1 26 LDDGYRWRKYGQKAVKNSSFPRSYYRCTAAQCGVKKLVERSQQDPSTVVTTYEGRHAHP 84
                           59********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.0E-331386IPR003657WRKY domain
SuperFamilySSF1182902.35E-282086IPR003657WRKY domain
PROSITE profilePS5081130.2512186IPR003657WRKY domain
SMARTSM007745.2E-372685IPR003657WRKY domain
PfamPF031063.6E-262784IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MKEGKREKKP RGSRVAFATK SAVDHLDDGY RWRKYGQKAV KNSSFPRSYY RCTAAQCGVK  60
KLVERSQQDP STVVTTYEGR HAHPSPIATH RGSRMLMATG VDTVYSLDVL QHQHHGFFPA  120
GTDVYGRMYA LPSTDASVVA HRSSEYGGMQ VHAGVLPDAV MSYEHVHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2lex_A4e-2719861077Probable WRKY transcription factor 4
1wj2_A4e-2719861077Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotO229004e-39WRK23_ARATH; Probable WRKY transcription factor 23
TrEMBLW4ZU831e-123W4ZU83_WHEAT; Uncharacterized protein
TrEMBLM7YVL61e-121M7YVL6_TRIUA; Putative WRKY transcription factor 23
STRINGMLOC_44947.18e-90(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.12e-40WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]